7.3. IO functions¶
- read_from_buffer(f_file, length, offset)[source]¶
Return 'length' bits of file 'f_file' starting at offset 'offset'
- class MAFLine(line)[source]¶
A reader for MAF format.
mode refname start algsize strand refsize alignment
a s ref 100 10 + 100000 ---AGC-CAT-CATT s contig 0 10 + 10 ---AGC-CAT-CATT a s ref 100 12 + 100000 ---AGC-CAT-CATTTT s contig 0 12 + 12 ---AGC-CAT-CATTTT
The alignments are stored by pair, one item for the reference, one for the query. The query (second line) starts at zero.