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# Bioconvert is a project to facilitate the interconversion #
# of life science data from one format to another. #
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"""Convert :term:`BAM` format to :term:`JSON` format"""
import colorlog
from bioconvert import ConvBase
from bioconvert.core.decorators import requires
logger = colorlog.getLogger(__name__)
__all__ = ['BAM2JSON']
[docs]class BAM2JSON(ConvBase):
"""Convert :term:`BAM` format to :term:`JSON` file
Methods available are based on bamtools [BAMTOOLS]_.
"""
#: Default value
_default_method = "bamtools"
def __init__(self, infile, outfile):
""".. rubric:: constructor
:param str infile:
:param str outfile:
"""
super(BAM2JSON, self).__init__(infile, outfile)