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# Bioconvert is a project to facilitate the interconversion #
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"""Convert :term:`BAM` to :term:`WIGGLE` format"""
import colorlog
from bioconvert import ConvBase
from bioconvert.core.decorators import requires
_log = colorlog.getLogger(__name__)
__all__ = ["BAM2WIGGLE"]
[docs]class BAM2WIGGLE(ConvBase):
"""Convert sorted :term:`BAM` file into :term:`WIGGLE` file
Methods available are based on wiggletools [WIGGLETOOLS]_.
"""
_default_method = "wiggletools"
def __init__(self, infile, outfile):
"""
:param str infile: The path to the input BAM file. **It must be sorted**.
:param str outfile: The path to the output file
"""
super(BAM2WIGGLE, self).__init__(infile, outfile)