###########################################################################
# Bioconvert is a project to facilitate the interconversion #
# of life science data from one format to another. #
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"""Convert :term:`SAM` file to :term:`BAM` format"""
import colorlog
from bioconvert import ConvBase
from bioconvert.core.decorators import requires
logger = colorlog.getLogger(__name__)
__all__ = ["SAM2BAM"]
[docs]class SAM2BAM(ConvBase):
"""Convert :term:`SAM` file to :term:`BAM` file"""
#: Default value
_default_method = "samtools"
_threading = True
def __init__(self, infile, outfile, *args, **kargs):
""".. rubric:: constructor
:param str infile:
:param str outfile:
"""
super(SAM2BAM, self).__init__(infile, outfile, *args, **kargs)