###########################################################################
# Bioconvert is a project to facilitate the interconversion #
# of life science data from one format to another. #
# #
# Copyright © 2018-2022 Institut Pasteur, Paris and CNRS. #
# #
# bioconvert is free software: you can redistribute it and/or modify #
# it under the terms of the GNU General Public License as published by #
# the Free Software Foundation, either version 3 of the License, or #
# (at your option) any later version. #
# #
# bioconvert is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# #
# You should have received a copy of the GNU General Public License #
# along with this program (COPYING file). #
# If not, see <http://www.gnu.org/licenses/>. #
# #
# Repository: https://github.com/bioconvert/bioconvert #
# Documentation: http://bioconvert.readthedocs.io #
###########################################################################
"""Convert :term:`BIGWIG` format to :term:`WIGGLE` format"""
import colorlog
from bioconvert import ConvBase
from bioconvert.core.decorators import requires
_log = colorlog.getLogger(__name__)
__all__ = ["BIGWIG2WIGGLE"]
[docs]class BIGWIG2WIGGLE(ConvBase):
"""Convert sorted :term:`BIGWIG` file into :term:`WIGGLE` file
Methods available are based on pybigwig [DEEPTOOLS]_.
"""
#: Default value
_default_method = "wiggletools"
def __init__(self, infile, outfile):
"""
:param str infile: The path to the input BIGWIG file. **It must be sorted**.
:param str outfile: The path to the output file
"""
super(BIGWIG2WIGGLE, self).__init__(infile, outfile)