###########################################################################
# Bioconvert is a project to facilitate the interconversion #
# of life science data from one format to another. #
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"""Convert :term:`VCF` to :term:`BCF` format"""
import colorlog
from bioconvert import ConvBase
from bioconvert.core.decorators import requires
logger = colorlog.getLogger(__name__)
__all__ = ["VCF2BCF"]
[docs]class VCF2BCF(ConvBase):
"""Convert :term:`VCF` file to :term:`BCF` format
Method based on bcftools [BCFTOOLS]_.
"""
#: Default value
_default_method = "bcftools"
def __init__(self, infile, outfile=None, *args, **kwargs):
"""
:param str infile: The path to the input FASTA file.
:param str outfile: The path to the output file.
"""
super(VCF2BCF, self).__init__(infile, outfile, *args, **kwargs)