.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/plot_graph_clustered.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_plot_graph_clustered.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_plot_graph_clustered.py:


Possible Conversion (clustered)
================================

Plot directed graph of possible conversions clustered by field

.. GENERATED FROM PYTHON SOURCE LINES 33-36

.. code-block:: Python

    from bioconvert.core.graph import create_graph



.. GENERATED FROM PYTHON SOURCE LINES 37-39

If you use pygraphviz, you can have a good quality
image using:

.. GENERATED FROM PYTHON SOURCE LINES 39-43

.. code-block:: Python

    import matplotlib as mpl

    mpl.rcParams["figure.dpi"] = 250


.. GENERATED FROM PYTHON SOURCE LINES 44-50

In order to create the following image, you need graphviz
and pygraphviz.
If you cannot install those packages, you may use a singularity
image like in the following example by setting the use_singularity
parameter to True. This would work under Linux. Not tested on other systems
yet.

.. GENERATED FROM PYTHON SOURCE LINES 50-56

.. code-block:: Python

    try:
        create_graph("conversion.png", use_singularity=False, include_subgraph=True)
    except:
        create_graph("conversion.png", use_singularity=True, include_subgraph=True)



.. GENERATED FROM PYTHON SOURCE LINES 58-65

.. code-block:: Python

    from pylab import imshow, imread, xticks, yticks, gca

    imshow(imread("conversion.png"), interpolation="nearest")
    xticks([])
    yticks([])
    ax = gca()
    ax.axis("off")


.. _sphx_glr_download_auto_examples_plot_graph_clustered.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_graph_clustered.ipynb <plot_graph_clustered.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_graph_clustered.py <plot_graph_clustered.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_graph_clustered.zip <plot_graph_clustered.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_